IL_5J4D_186

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5J4D|1|FB|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_186 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0863

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5J4D|1|FB|G|148
5J4D|1|FB|A|149
5J4D|1|FB|C|150
5J4D|1|FB|A|151
5J4D|1|FB|A|152
5J4D|1|FB|C|153
*
5J4D|1|FB|G|168
5J4D|1|FB|C|169
5J4D|1|FB|U|170
5J4D|1|FB|A|171
5J4D|1|FB|A|172
5J4D|1|FB|U|173
5J4D|1|FB|C|174

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain HD

30S ribosomal protein S20