IL_5J4D_196

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_196 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0894

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5J4D|1|FB|G|450
5J4D|1|FB|A|451
5J4D|1|FB|A|452
5J4D|1|FB|A|453
5J4D|1|FB|C|454
5J4D|1|FB|C|455
*
5J4D|1|FB|G|477
5J4D|1|FB|A|478
5J4D|1|FB|C|479
5J4D|1|FB|U|480
5J4D|1|FB|G|481
5J4D|1|FB|A|482
5J4D|1|FB|C|483

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S16