IL_5J4D_197

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_197 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0761

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5J4D|1|FB|C|504
5J4D|1|FB|G|505
5J4D|1|FB|G|506
5J4D|1|FB|C|507
5J4D|1|FB|C|508
5J4D|1|FB|A|509
5J4D|1|FB|A|510
5J4D|1|FB|C|511
*
5J4D|1|FB|G|540
5J4D|1|FB|G|541

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain RC

30S ribosomal protein S4

Chain SC

30S ribosomal protein S5

Chain ZC

30S ribosomal protein S12