IL_5J4D_209

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_209 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5J4D|1|FB|G|774
5J4D|1|FB|G|775
5J4D|1|FB|G|776
5J4D|1|FB|A|777
5J4D|1|FB|G|778
*
5J4D|1|FB|U|804
5J4D|1|FB|C|805

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain JB

50S ribosomal protein L2

Chain YC

30S ribosomal protein S11