IL_5J4D_221
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5J4D|1|FB|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_221 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.188
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|FB|U|1052
5J4D|1|FB|G|1053
5J4D|1|FB|C|1054
5J4D|1|FB|A|1055
5J4D|1|FB|U|1056
*
5J4D|1|FB|A|1204
5J4D|1|FB|U|1205
5J4D|1|FB|G|1206
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S14 type Z
- Chain MC
- mRNA
- Chain OC
- Peptide chain release factor 1
- Chain QC
- 30S ribosomal protein S3
- Chain XC
- 30S ribosomal protein S10
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