IL_5J4D_222

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

5J4D|1|FB|C|1200, 5J4D|1|FB|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_222 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.117

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5J4D|1|FB|G|1057
5J4D|1|FB|G|1058
*
5J4D|1|FB|U|1199
5J4D|1|FB|C|1200
5J4D|1|FB|A|1201
5J4D|1|FB|G|1202
5J4D|1|FB|C|1203

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S14 type Z

Chain QC

30S ribosomal protein S3

Chain XC

30S ribosomal protein S10