IL_5J4D_225
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUG*CACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_225 not in the Motif Atlas
- Homologous match to IL_6CZR_158
- Geometric discrepancy: 0.2285
- The information below is about IL_6CZR_158
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- Minor groove platform
- Motif group
- IL_40144.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5J4D|1|FB|G|1124
5J4D|1|FB|U|1125
5J4D|1|FB|U|1126
5J4D|1|FB|G|1127
*
5J4D|1|FB|C|1145
5J4D|1|FB|A|1146
5J4D|1|FB|C|1147
5J4D|1|FB|U|1148
5J4D|1|FB|C|1149
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain WC
- 30S ribosomal protein S9
- Chain XC
- 30S ribosomal protein S10
Coloring options: