IL_5J4D_229
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|FB|U|1257, 5J4D|1|FB|A|1280, 5J4D|1|FB|U|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_229 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1568
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J4D|1|FB|G|1255
5J4D|1|FB|A|1256
5J4D|1|FB|U|1257
5J4D|1|FB|G|1258
*
5J4D|1|FB|C|1277
5J4D|1|FB|U|1278
5J4D|1|FB|A|1279
5J4D|1|FB|A|1280
5J4D|1|FB|U|1281
5J4D|1|FB|C|1282
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S14 type Z
- Chain QC
- 30S ribosomal protein S3
- Chain WC
- 30S ribosomal protein S9
- Chain XC
- 30S ribosomal protein S10
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