IL_5J4D_231

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_231 not in the Motif Atlas

Homologous match to IL_4LFB_054

Geometric discrepancy: 0.1287

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

5J4D|1|FB|C|1260
5J4D|1|FB|A|1261
5J4D|1|FB|C|1262
*
5J4D|1|FB|G|1273
5J4D|1|FB|G|1274

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GD

30S ribosomal protein S19

Chain ID

30S ribosomal protein Thx