IL_5J4D_233

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

5J4D|1|FB|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_233 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.2364

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|FB|C|1399
5J4D|1|FB|5MC|1400
5J4D|1|FB|G|1401
*
5J4D|1|FB|C|1501
5J4D|1|FB|A|1502
5J4D|1|FB|A|1503
5J4D|1|FB|G|1504

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain MC

mRNA

Chain NC

Transfer RNA; tRNA

Chain OC

Peptide chain release factor 1