IL_5J4D_244

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

5J4D|1|GB|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_244 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.0935

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

5J4D|1|GB|G|81
5J4D|1|GB|G|82
5J4D|1|GB|G|83
5J4D|1|GB|A|84
5J4D|1|GB|G|85
*
5J4D|1|GB|C|97
5J4D|1|GB|G|98
5J4D|1|GB|U|99
5J4D|1|GB|G|101
5J4D|1|GB|G|102
5J4D|1|GB|A|103
5J4D|1|GB|U|104
5J4D|1|GB|C|105

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain EC

50S ribosomal protein L29