IL_5J4D_288

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_288 not in the Motif Atlas

Homologous match to IL_9DFE_048

Geometric discrepancy: 0.0574

The information below is about IL_9DFE_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5J4D|1|GB|A|1262
5J4D|1|GB|U|1263
5J4D|1|GB|G|1264
5J4D|1|GB|A|1265
5J4D|1|GB|G|1266
5J4D|1|GB|U|1267
5J4D|1|GB|A|1268
5J4D|1|GB|A|1269
*
5J4D|1|GB|U|2011
5J4D|1|GB|G|2012
5J4D|1|GB|A|2013
5J4D|1|GB|A|2014
5J4D|1|GB|A|2015
5J4D|1|GB|U|2016
5J4D|1|GB|U|2017

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L32

Chain LB

50S ribosomal protein L4

Chain YB

50S ribosomal protein L22