IL_5J4D_290

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_290 not in the Motif Atlas

Homologous match to IL_9DFE_050

Geometric discrepancy: 0.091

The information below is about IL_9DFE_050

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5J4D|1|GB|G|1319
5J4D|1|GB|C|1320
5J4D|1|GB|A|1321
5J4D|1|GB|A|1322
5J4D|1|GB|U|1323
*
5J4D|1|GB|A|1331
5J4D|1|GB|G|1332
5J4D|1|GB|C|1333

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain TB

50S ribosomal protein L17

Chain YB

50S ribosomal protein L22

Chain ZB

50S ribosomal protein L23