IL_5J4D_294

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5J4D|1|GB|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_294 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.1518

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

5J4D|1|GB|C|1417
5J4D|1|GB|G|1418
5J4D|1|GB|A|1419
5J4D|1|GB|U|1420
5J4D|1|GB|G|1421
*
5J4D|1|GB|C|1577
5J4D|1|GB|U|1578
5J4D|1|GB|A|1579
5J4D|1|GB|A|1580
5J4D|1|GB|G|1581

Current chains

Chain GB

25S ribosomal RNA

Nearby chains