IL_5J4D_296

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5J4D|1|GB|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_296 not in the Motif Atlas

Homologous match to IL_9DFE_056

Geometric discrepancy: 0.0922

The information below is about IL_9DFE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5J4D|1|GB|C|1437
5J4D|1|GB|U|1438
5J4D|1|GB|A|1439
5J4D|1|GB|G|1440
*
5J4D|1|GB|C|1551
5J4D|1|GB|G|1552
5J4D|1|GB|A|1553
5J4D|1|GB|A|1554
5J4D|1|GB|G|1555

Current chains

Chain GB

25S ribosomal RNA

Nearby chains