IL_5J4D_302

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5J4D|1|GB|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_302 not in the Motif Atlas

Geometric match to IL_8VTW_062

Geometric discrepancy: 0.0996

The information below is about IL_8VTW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80287.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5J4D|1|GB|G|1526
5J4D|1|GB|G|1527
5J4D|1|GB|A|1528
5J4D|1|GB|A|1529
5J4D|1|GB|G|1530
*
5J4D|1|GB|U|1541
5J4D|1|GB|G|1542
5J4D|1|GB|A|1543
5J4D|1|GB|C|1544
5J4D|1|GB|A|1545
5J4D|1|GB|A|1546
5J4D|1|GB|C|1546|||B

Current chains

Chain GB

25S ribosomal RNA

Nearby chains