IL_5J4D_307

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5J4D|1|GB|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_307 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.1239

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5J4D|1|GB|C|1686
5J4D|1|GB|G|1687
5J4D|1|GB|U|1688
5J4D|1|GB|A|1689
5J4D|1|GB|A|1690
5J4D|1|GB|C|1691
*
5J4D|1|GB|G|1696
5J4D|1|GB|G|1697
5J4D|1|GB|A|1698
5J4D|1|GB|G|1699
5J4D|1|GB|A|1700
5J4D|1|GB|A|1701
5J4D|1|GB|G|1702

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2