IL_5J4D_312

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

5J4D|1|GB|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_312 not in the Motif Atlas

Homologous match to IL_9DFE_073

Geometric discrepancy: 0.2135

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5J4D|1|GB|G|1846
5J4D|1|GB|A|1847
5J4D|1|GB|A|1848
5J4D|1|GB|G|1849
*
5J4D|1|GB|C|1893
5J4D|1|GB|C|1894

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain IB

Transfer RNA; tRNA

Chain JB

50S ribosomal protein L2