IL_5J4D_337

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5J4D|1|GB|A|2572, 5J4D|1|GB|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_337 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.2167

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

5J4D|1|GB|C|2512
5J4D|1|GB|G|2513
*
5J4D|1|GB|C|2571
5J4D|1|GB|A|2572
5J4D|1|GB|C|2573
5J4D|1|GB|G|2574

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain OC

Peptide chain release factor 1