IL_5J4D_341

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5J4D|1|GB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_341 not in the Motif Atlas

Homologous match to IL_9DFE_101

Geometric discrepancy: 0.0904

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5J4D|1|GB|U|2636
5J4D|1|GB|U|2637
5J4D|1|GB|G|2638
5J4D|1|GB|A|2639
5J4D|1|GB|G|2640
*
5J4D|1|GB|C|2774
5J4D|1|GB|A|2775
5J4D|1|GB|A|2776
5J4D|1|GB|G|2777
5J4D|1|GB|A|2778
5J4D|1|GB|U|2779
5J4D|1|GB|G|2780
5J4D|1|GB|A|2781
5J4D|1|GB|G|2782

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L13