IL_5J4D_344

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_344 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.0833

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5J4D|1|GB|U|2687
5J4D|1|GB|U|2688
5J4D|1|GB|U|2689
5J4D|1|GB|C|2690
5J4D|1|GB|C|2691
*
5J4D|1|GB|G|2718
5J4D|1|GB|G|2719
5J4D|1|GB|U|2720
5J4D|1|GB|A|2721
5J4D|1|GB|G|2722

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain TB

50S ribosomal protein L17

Chain VB

50S ribosomal protein L19