IL_5J4D_348

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_348 not in the Motif Atlas

Homologous match to IL_9DFE_108

Geometric discrepancy: 0.1324

The information below is about IL_9DFE_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34942.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5J4D|1|GB|G|2843
5J4D|1|GB|G|2844
5J4D|1|GB|G|2845
5J4D|1|GB|G|2846
*
5J4D|1|GB|C|2870
5J4D|1|GB|C|2871
5J4D|1|GB|G|2872
5J4D|1|GB|A|2873
5J4D|1|GB|C|2874

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain TB

50S ribosomal protein L17

Chain VB

50S ribosomal protein L19