IL_5J4D_355
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_355 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0647
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5J4D|1|A|G|673
5J4D|1|A|G|674
5J4D|1|A|A|675
5J4D|1|A|A|676
5J4D|1|A|U|677
*
5J4D|1|A|G|713
5J4D|1|A|G|714
5J4D|1|A|A|715
5J4D|1|A|A|716
5J4D|1|A|C|717
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AB
- 30S ribosomal protein S18
- Chain E
- 50S ribosomal protein L2
- Chain OA
- 30S ribosomal protein S6
- Chain TA
- 30S ribosomal protein S11
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