IL_5J4D_359
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 5J4D|1|B|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_359 not in the Motif Atlas
- Homologous match to IL_9DFE_024
- Geometric discrepancy: 0.1021
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5J4D|1|B|C|844
5J4D|1|B|G|845
5J4D|1|B|C|846
5J4D|1|B|U|847
5J4D|1|B|G|848
5J4D|1|B|A|849
5J4D|1|B|C|850
*
5J4D|1|B|G|928
5J4D|1|B|G|929
5J4D|1|B|U|930
5J4D|1|B|G|931
5J4D|1|B|G|932
5J4D|1|B|A|933
5J4D|1|B|G|934
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L30
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