IL_5J4D_373

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

5J4D|1|GB|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_373 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.3343

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5J4D|1|GB|C|2108
5J4D|1|GB|U|2109
5J4D|1|GB|G|2110
5J4D|1|GB|C|2111
5J4D|1|GB|G|2112
5J4D|1|GB|U|2113
5J4D|1|GB|A|2114
5J4D|1|GB|G|2115
5J4D|1|GB|G|2116
5J4D|1|GB|A|2117
5J4D|1|GB|U|2118
5J4D|1|GB|A|2119
5J4D|1|GB|G|2120
*
5J4D|1|GB|C|2178
5J4D|1|GB|C|2179
5J4D|1|GB|U|2180
5J4D|1|GB|G|2181

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain IB

Transfer RNA; tRNA