IL_5J5B_038
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J5B_038 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0358
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5J5B|1|AA|G|887
5J5B|1|AA|G|888
5J5B|1|AA|A|889
5J5B|1|AA|G|890
5J5B|1|AA|U|891
5J5B|1|AA|A|892
5J5B|1|AA|C|893
5J5B|1|AA|G|894
*
5J5B|1|AA|U|905
5J5B|1|AA|A|906
5J5B|1|AA|A|907
5J5B|1|AA|A|908
5J5B|1|AA|A|909
5J5B|1|AA|C|910
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
Coloring options: