IL_5J5B_043

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_043 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.0286

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5J5B|1|AA|G|993
5J5B|1|AA|A|994
5J5B|1|AA|C|995
5J5B|1|AA|A|996
5J5B|1|AA|U|997
*
5J5B|1|AA|A|1044
5J5B|1|AA|C|1045

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14