IL_5J5B_060

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_060 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0379

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5J5B|1|AA|G|1401
5J5B|1|AA|4OC|1402
5J5B|1|AA|C|1403
5J5B|1|AA|C|1404
*
5J5B|1|AA|G|1497
5J5B|1|AA|UR3|1498
5J5B|1|AA|A|1499
5J5B|1|AA|A|1500
5J5B|1|AA|C|1501

Current chains

Chain AA

16S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA