IL_5J5B_082

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_082 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1715

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5J5B|1|BA|G|292
5J5B|1|BA|G|293
*
5J5B|1|BA|U|304
5J5B|1|BA|G|305
5J5B|1|BA|A|306
5J5B|1|BA|C|307
5J5B|1|BA|C|308

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16