IL_5J5B_120
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5J5B|1|BA|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J5B_120 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.034
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J5B|1|BA|U|1247
5J5B|1|BA|A|1248
5J5B|1|BA|C|1249
5J5B|1|BA|A|1250
5J5B|1|BA|A|1251
5J5B|1|BA|A|1252
5J5B|1|BA|G|1253
*
5J5B|1|BA|C|1284
5J5B|1|BA|A|1285
5J5B|1|BA|U|1286
5J5B|1|BA|A|1287
5J5B|1|BA|A|1288
5J5B|1|BA|A|1289
5J5B|1|BA|G|1290
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BG
- 30S ribosomal protein S7
- Chain BI
- 30S ribosomal protein S9
- Chain BJ
- 30S ribosomal protein S10
- Chain BN
- 30S ribosomal protein S14
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