IL_5J5B_175

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5J5B|1|CA|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_175 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5J5B|1|CA|C|1208
5J5B|1|CA|U|1209
5J5B|1|CA|G|1210
5J5B|1|CA|C|1211
5J5B|1|CA|G|1212
5J5B|1|CA|A|1213
5J5B|1|CA|A|1214
5J5B|1|CA|G|1215
*
5J5B|1|CA|U|1234
5J5B|1|CA|G|1235
5J5B|1|CA|G|1236
5J5B|1|CA|A|1237
5J5B|1|CA|G|1238

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein L20