IL_5J5B_233

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_233 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5J5B|1|CA|C|2652
5J5B|1|CA|U|2653
5J5B|1|CA|A|2654
5J5B|1|CA|G|2655
5J5B|1|CA|U|2656
5J5B|1|CA|A|2657
5J5B|1|CA|C|2658
*
5J5B|1|CA|G|2663
5J5B|1|CA|G|2664
5J5B|1|CA|A|2665
5J5B|1|CA|C|2666
5J5B|1|CA|C|2667
5J5B|1|CA|G|2668

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CG

50S ribosomal protein L6