IL_5J5B_239

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_239 not in the Motif Atlas

Homologous match to IL_5J7L_352

Geometric discrepancy: 0.063

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

5J5B|1|CA|G|2838
5J5B|1|CA|G|2839
*
5J5B|1|CA|U|2878
5J5B|1|CA|A|2879
5J5B|1|CA|C|2880

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17