IL_5J5B_268

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

5J5B|1|DA|U|846||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_268 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.0441

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5J5B|1|DA|A|844
5J5B|1|DA|A|845||A
5J5B|1|DA|U|846||A
5J5B|1|DA|U|847||A
*
5J5B|1|DA|A|933
5J5B|1|DA|U|934

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30