IL_5J5B_367

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5J5B|1|BA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_367 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.157

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5J5B|1|BA|U|1052
5J5B|1|BA|G|1053
5J5B|1|BA|C|1054
5J5B|1|BA|A|1055
5J5B|1|BA|U|1056
*
5J5B|1|BA|A|1204
5J5B|1|BA|U|1205
5J5B|1|BA|G|1206

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14