IL_5J5B_374

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_374 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0373

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J5B|1|CA|U|1851
5J5B|1|CA|U|1852
5J5B|1|CA|A|1853
5J5B|1|CA|A|1854
5J5B|1|CA|U|1855
5J5B|1|CA|U|1856
5J5B|1|CA|G|1857
5J5B|1|CA|A|1858
5J5B|1|CA|U|1859
5J5B|1|CA|G|1860
*
5J5B|1|CA|U|1882
5J5B|1|CA|U|1883
5J5B|1|CA|G|1884
5J5B|1|CA|A|1885
5J5B|1|CA|U|1886
5J5B|1|CA|C|1887
5J5B|1|CA|G|1888
5J5B|1|CA|A|1889
5J5B|1|CA|A|1890
5J5B|1|CA|G|1891

Current chains

Chain CA

23S rRNA

Nearby chains