IL_5J5B_377

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5J5B|1|CA|U|2111, 5J5B|1|CA|A|2114, 5J5B|1|CA|G|2115, 5J5B|1|CA|U|2118, 5J5B|1|CA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_377 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4948

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5J5B|1|CA|G|2110
5J5B|1|CA|U|2111
5J5B|1|CA|G|2112
5J5B|1|CA|U|2113
5J5B|1|CA|A|2114
5J5B|1|CA|G|2115
5J5B|1|CA|G|2116
5J5B|1|CA|A|2117
5J5B|1|CA|U|2118
5J5B|1|CA|A|2119
5J5B|1|CA|G|2120
*
5J5B|1|CA|C|2178
5J5B|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains