IL_5J7L_030

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

5J7L|1|AA|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5J7L|1|AA|U|605
5J7L|1|AA|G|606
5J7L|1|AA|A|607
5J7L|1|AA|A|608
5J7L|1|AA|A|609
5J7L|1|AA|U|610
5J7L|1|AA|C|611
5J7L|1|AA|C|612
*
5J7L|1|AA|G|628
5J7L|1|AA|A|629
5J7L|1|AA|A|630
5J7L|1|AA|C|631
5J7L|1|AA|U|632
5J7L|1|AA|G|633

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AH

30S ribosomal protein S8

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17