IL_5J7L_035

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5J7L|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5J7L|1|AA|U|684
5J7L|1|AA|G|685
5J7L|1|AA|U|686
5J7L|1|AA|A|687
5J7L|1|AA|G|688
*
5J7L|1|AA|C|699
5J7L|1|AA|G|700
5J7L|1|AA|U|701
5J7L|1|AA|A|702
5J7L|1|AA|G|703
5J7L|1|AA|A|704
5J7L|1|AA|G|705
5J7L|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA