Motif IL_01488.3 Version IL_01488.3 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-5 | 1-12 | 2-11 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_004 | 4V9F | 0.2617 | 1 | Kink-turn | 0 | LSU rRNA | C | 93 | G | 94 | A | 95 | G | 97 | A | 98 | A | 99 | C | 100 | * | G | 77 | G | 78 | G | 79 | A | 80 | G | 81 | cWW | ntsS | tSH | ntHS | tHS | cWW | |
| 2 | IL_5J7L_035 | 5J7L | 0.2326 | 1 | Kink-turn | AA | SSU rRNA | C | 699 | G | 700 | U | 701 | G | 703 | A | 704 | G | 705 | A | 706 | * | U | 684 | G | 685 | U | 686 | A | 687 | G | 688 | cWW | ntsS | ntSH | tHW | tHS | cWW | |
| 3 | IL_4WF9_004 | 4WF9 | 0.1997 | 1 | Kink-turn | X | LSU rRNA | C | 97 | U | 98 | U | 99 | G | 101 | A | 102 | U | 103 | C | 104 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | ntsS | ntSH | ntSs | tHS | cWW | |
| 4 | IL_9DFE_004 | 9DFE | 0.1288 | 1 | Kink-turn (H) | 1A | LSU rRNA | C | 97 | G | 98 | U | 99 | G | 102 | A | 103 | U | 104 | C | 105 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | tsS | tSH | ntHS | tHS | cWW | |
| 5 | IL_6UFG_001 | 6UFG | 0.0999 | 1 | Kink-turn | A | RNA (166-MER) | C | 3 | A | 4 | U | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | cWW | ntsS | tSH | tHS | cWW | ||
| 6 | IL_6UFM_001 | 6UFM | 0.0000 | 1 | Kink-turn | B | RNA (98-MER) | C | 3 | G | 4 | A | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | cWW | tsS | tSH | tHS | cWW | ||
| 7 | IL_1T0K_001 | 1T0K | 0.1527 | 1 | Kink-turn | D+C | RNA (16-mer) | C | 54 | A | 55 | G | 56 | G | 58 | A | 59 | U | 60 | G | 61 | * | C | 9 | G | 10 | G | 11 | A | 12 | G | 13 | cWW | tsS | ntSH | ntHS | cWW | ||
| 8 | IL_4GXY_005 | 4GXY | 0.1621 | 1 | Kink-turn | A | Adenosylcobalamin riboswitch | C | 139 | G | 140 | A | 141 | G | 143 | A | 144 | U | 145 | C | 146 | * | G | 82 | G | 83 | G | 84 | A | 85 | G | 86 | ncsS | cWW | ntsS | tSH | tHS | cWW | |
| 9 | IL_9L6Y_001 | 9L6Y | 0.2104 | 1 | B | CS2 RNA | C | 21 | C | 22 | A | 23 | G | 25 | A | 26 | C | 27 | G | 28 | * | C | 6 | A | 7 | G | 8 | A | 9 | G | 10 | csS | cWW | ntsS | ntSH | ncWWa | cWW | ||
| 10 | IL_6UFH_001 | 6UFH | 0.2157 | 1 | Kink-turn | A | RNA (167-MER) | C | 3 | A | 4 | U | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | ncsS | cWW | ntsS | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUCGAUC*GGGAG | 2 |
| CGAAGAAC*GGGAG | 1 |
| CGUAGAGA*UGUAG | 1 |
| CUUUGAUC*GGGAG | 1 |
| CGUGGAUC*GGGAG | 1 |
| CGACGAUC*GGGAG | 1 |
| CAGAGAUG*CGGAG | 1 |
| CGAGGAUC*GGGAG | 1 |
| CCAUGACG*CAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCGAU*GGA | 2 |
| GAAGAA*GGA | 1 |
| GUAGAG*GUA | 1 |
| UUUGAU*GGA | 1 |
| GUGGAU*GGA | 1 |
| GACGAU*GGA | 1 |
| AGAGAU*GGA | 1 |
| GAGGAU*GGA | 1 |
| CAUGAC*AGA | 1 |
- Annotations
-
- Kink-turn (8)
- Kink-turn (H) (1)
- (1)
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.21 | Max 0.40
Coloring options: