IL_5J7L_063

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5J7L|1|AA|A|1430
5J7L|1|AA|A|1431
5J7L|1|AA|G|1432
5J7L|1|AA|A|1433
5J7L|1|AA|A|1434
5J7L|1|AA|G|1435
*
5J7L|1|AA|C|1466
5J7L|1|AA|C|1467
5J7L|1|AA|A|1468
5J7L|1|AA|C|1469
5J7L|1|AA|U|1470

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DL

50S ribosomal protein L14

Chain DQ

50S ribosomal protein L19