IL_5J7L_143

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_143 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.0397

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J7L|1|CA|U|606
5J7L|1|CA|U|607
5J7L|1|CA|A|608
5J7L|1|CA|A|609
5J7L|1|CA|C|610
*
5J7L|1|CA|G|618
5J7L|1|CA|G|619
5J7L|1|CA|G|620
5J7L|1|CA|A|621
5J7L|1|CA|G|622

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15