IL_5J7L_145

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5J7L|1|CA|G|801, 5J7L|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_145 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0817

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|G|674
5J7L|1|CA|A|675
5J7L|1|CA|A|676
5J7L|1|CA|A|677
5J7L|1|CA|C|678
*
5J7L|1|CA|G|799
5J7L|1|CA|A|800
5J7L|1|CA|G|801
5J7L|1|CA|A|802
5J7L|1|CA|U|803
5J7L|1|CA|A|804
5J7L|1|CA|G|805
5J7L|1|CA|C|806

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15