IL_5J7L_235

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

5J7L|1|CA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_235 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0526

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J7L|1|CA|G|2737
5J7L|1|CA|A|2738
5J7L|1|CA|U|2739
5J7L|1|CA|A|2740
5J7L|1|CA|A|2741
5J7L|1|CA|G|2742
*
5J7L|1|CA|C|2762
5J7L|1|CA|G|2763
5J7L|1|CA|A|2764
5J7L|1|CA|A|2765
5J7L|1|CA|A|2766
5J7L|1|CA|C|2767

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CK

50S ribosomal protein L13