IL_5J7L_257

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5J7L|1|DA|C|564
5J7L|1|DA|C|565
5J7L|1|DA|U|566
*
5J7L|1|DA|A|575
5J7L|1|DA|U|576
5J7L|1|DA|G|577

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15

Chain DR

50S ribosomal protein L20

Chain DS

50S ribosomal protein L21