IL_5J7L_280

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5J7L|1|DA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|U|1018
5J7L|1|DA|U|1019
5J7L|1|DA|A|1020
5J7L|1|DA|A|1021
5J7L|1|DA|G|1022
5J7L|1|DA|U|1023
5J7L|1|DA|G|1024
*
5J7L|1|DA|C|1140
5J7L|1|DA|U|1141
5J7L|1|DA|A|1142
5J7L|1|DA|A|1143
5J7L|1|DA|A|1144

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DK

50S ribosomal protein L13