Motif IL_57188.5 Version IL_57188.5 of this group appears in releases 3.91 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-4 | 2-6 | 2-10 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_040 | 4V9F | 0.0560 | 2 | Kink-turn related | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ncSH | tWW | tWW | cSH | cWW | ||
| 2 | IL_9DFE_038 | 9DFE | 0.0000 | 2 | Kink-turn related (H) | 1A | LSU rRNA | C | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142|||A | G | 1144 | cWW | ncSH | tWW | tWW | ntWW | cSH | cWW | |
| 3 | IL_5J7L_280 | 5J7L | 0.0692 | 1 | Kink-turn related | DA | LSU rRNA | U | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142 | A | 1144 | cWW | ncSH | tWW | tWW | ntWW | cSH | cWW | |
| 4 | IL_4WF9_039 | 4WF9 | 0.1832 | 1 | Kink-turn related | X | LSU rRNA | U | 1062 | U | 1063 | A | 1064 | A | 1065 | G | 1066 | U | 1067 | G | 1068 | * | C | 1184 | U | 1185 | A | 1186 | A | 1188 | cWW | cSH | cWW | |||||
| 5 | IL_7A0S_036 | 7A0S | 0.3243 | 2 | Kink-turn related | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ncSW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGUG*CUAAA | 2 |
| UUAAGUG*CUCAAA | 1 |
| CUAAGUG*CUUAAG | 1 |
| CUCAGUG*CUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU*UAA | 2 |
| UAAGU*UCAA | 1 |
| UAAGU*UUAA | 1 |
| UCAGU*UCAA | 1 |
- Annotations
-
- Kink-turn related (4)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Heat map statistics
- Min 0.06 | Avg 0.15 | Max 0.32
Coloring options: