IL_5J7L_282

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5J7L|1|DA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW

Motif group

IL_12554.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5J7L|1|DA|G|1031
5J7L|1|DA|A|1032
5J7L|1|DA|U|1033
5J7L|1|DA|G|1034
*
5J7L|1|DA|C|1121
5J7L|1|DA|G|1122
5J7L|1|DA|C|1123

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16