IL_5J7L_313

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5J7L|1|DA|A|1801, 5J7L|1|DA|C|1816, 5J7L|1|DA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|U|1798
5J7L|1|DA|G|1799
5J7L|1|DA|C|1800
5J7L|1|DA|A|1801
5J7L|1|DA|A|1802
5J7L|1|DA|A|1803
5J7L|1|DA|C|1804
*
5J7L|1|DA|G|1813
5J7L|1|DA|G|1814
5J7L|1|DA|A|1815
5J7L|1|DA|C|1816
5J7L|1|DA|G|1817
5J7L|1|DA|U|1818
5J7L|1|DA|A|1819
5J7L|1|DA|U|1820
5J7L|1|DA|A|1821

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2