Motif IL_17069.5 Version IL_17069.5 of this group appears in releases 3.91 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-10 | 5-9 | 6-10 | 7-8 | 8-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_065 | 4V9F | 0.2321 | 3 | Kink-turn related | 0 | LSU rRNA | A | 1869 | C | 1870 | U | 1871 | G | 1873 | U | 1874 | A | 1875 | G | 1877 | * | C | 1854 | G | 1855 | C | 1856 | A | 1858 | A | 1859 | U | 1860 | cWW | ncWW | tHH | tWW | tsS | tHH | cWW | cSs |
| 2 | IL_4WF9_069 | 4WF9 | 0.1191 | 3 | Kink-turn related | X | LSU rRNA | U | 1840 | G | 1841 | A | 1842 | G | 1844 | U | 1845 | A | 1846 | A | 1848 | * | U | 1825 | G | 1826 | C | 1827 | A | 1829 | A | 1830 | A | 1831 | cWW | tSH | ntHH | ntWW | ntHH | cWW | cSs | |
| 3 | IL_9DFE_070 | 9DFE | 0.0717 | 3 | 1A | LSU rRNA | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | * | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | cWW | tSH | tHH | tWW | tsS | tHH | cWW | cSs | |
| 4 | IL_5J7L_313 | 5J7L | 0.0000 | 3 | Kink-turn related | DA | LSU rRNA | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | * | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | cWW | tSH | tHH | tWW | tsS | tHH | cWW | cSs |
| 5 | IL_7A0S_065 | 7A0S | 0.1055 | 3 | Kink-turn related | X | LSU rRNA | G | 1805 | G | 1806 | A | 1807 | G | 1809 | U | 1810 | A | 1811 | A | 1813 | * | U | 1789 | G | 1790 | C | 1791 | A | 1793 | A | 1794 | C | 1795 | cWW | tSH | tHH | tWW | ntHH | cWW | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCGUACG*CGCAAAU | 1 |
| UGAUGUAUA*UGCUAAA | 1 |
| GGAGGUAUA*UGCGAAC | 1 |
| GGACGUAUA*UGCAAAC | 1 |
| GGACGUAUA*UGCCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCGUAC*GCAAA | 1 |
| GAUGUAU*GCUAA | 1 |
| GAGGUAU*GCGAA | 1 |
| GACGUAU*GCAAA | 1 |
| GACGUAU*GCCAA | 1 |
- Annotations
-
- Kink-turn related (4)
- (1)
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.24
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